2G47	Hydrolase	date	Feb 21, 2006
title	Crystal Structure Of Human Insulin-Degrading Enzyme In Compl Amyloid-Beta (1-40)
authors	Y.Shen, W.J.Tang
compound		source
Molecule: Insulin-Degrading Enzyme Chain: A, B Synonym: Insulysin, Insulinase, Insulin Protease Ec: 3.4.24.56 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ide Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproex
Molecule: Amyloid Protein Beta A4 Chain: C, D Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Homo Sapie (Humans)
symmetry	Space Group: P 65	R_factor 0.203 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 262.433 262.433 90.706 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	DIO	enzyme	Hydrolase E.C.3.4.24.56 BRENDA
Gene Ontology	Chain Function Process Component A, B virus receptor activity D, C
Primary reference	Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism., Shen Y, Joachimiak A, Rosner MR, Tang WJ, Nature. 2006 Oct 19;443(7113):870-4. Epub 2006 Oct 11. PMID:17051221

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk] Biological Unit Coordinates (2g47.pdb1.gz) 169 Kb Biological Unit Coordinates (2g47.pdb2.gz) 169 Kb LPC: Ligand-Protein Contacts for 2G47 CSU: Contacts of Structural Units for 2G47 Likely Quarternary Molecular Structure file(s) for 2G47 Structure Factors (2309 Kb) Retrieve 2G47 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2G47 from S2C, [Save to disk] Re-refined 2g47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2G47 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2G47

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2G47, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2g47_C] [2g47] [2g47_B] [2g47_A] [2g47_D] SWISS-PROT database: [P05067] [P14735] Belongs to the amyloid β-protein peptide (aβpp) family according to TCDB. Domain organization of [A4_HUMAN] [IDE_HUMAN] by SWISSPFAM

Other resources with information on 2G47

Community annotation for 2G47 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---