2G6Z Hydrolase date Feb 26, 2006
title Crystal Structure Of Human Dusp5
authors S.J.Kim, S.E.Ryu
compound source
Molecule: Dual Specificity Protein Phosphatase 5
Chain: A, B, C
Fragment: Residues 174-384
Synonym: Dusp5, Dual Specificity Protein Phosphatase Hvh3, Tyrosine-Protein Phosphatase;
Ec: 3.1.3.48, 3.1.3.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 2 2
R_factor 0.244 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.712 92.712 165.213 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Primary referenceCrystal structure of the catalytic domain of human DUSP5, a dual specificity MAP kinase protein phosphatase., Jeong DG, Cho YH, Yoon TS, Kim JH, Ryu SE, Kim SJ, Proteins. 2007 Jan 1;66(1):253-8. PMID:17078075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2g6z.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 2G6Z
  • CSU: Contacts of Structural Units for 2G6Z
  • Likely Quarternary Molecular Structure file(s) for 2G6Z
  • Structure Factors (165 Kb)
  • Retrieve 2G6Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G6Z from S2C, [Save to disk]
  • Re-refined 2g6z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G6Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G6Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2G6Z, from MSDmotif at EBI
  • Fold representative 2g6z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g6z_B] [2g6z_C] [2g6z_A] [2g6z]
  • SWISS-PROT database: [Q16690]
  • Domain organization of [DUS5_HUMAN] by SWISSPFAM
  • Domain found in 2G6Z: [DSPc ] by SMART
  • Other resources with information on 2G6Z
  • Community annotation for 2G6Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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