2G76 Oxidoreductase date Feb 27, 2006
title Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase
authors A.P.Turnbull, E.Salah, P.Savitsky, O.Gileadi, F.Von Delft, A.Edwa C.Arrowsmith, J.Weigelt, M.Sundstrom, U.Oppermann, Structural G Consortium (Sgc)
compound source
Molecule: D-3-Phosphoglycerate Dehydrogenase
Chain: A, B
Fragment: Residues 3-314
Synonym: 3-Pgdh
Ec: 1.1.1.95
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phgdh, Pgdh3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21(De3)R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.084 124.113 59.502 90.00 100.99 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MLT, NAD enzyme Oxidoreductase E.C.1.1.1.95 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (2g76.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 2G76
  • CSU: Contacts of Structural Units for 2G76
  • Likely Quarternary Molecular Structure file(s) for 2G76
  • Structure Factors (481 Kb)
  • Retrieve 2G76 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G76 from S2C, [Save to disk]
  • Re-refined 2g76 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G76 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G76
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G76, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g76_B] [2g76] [2g76_A]
  • SWISS-PROT database: [O43175]
  • Domain organization of [SERA_HUMAN] by SWISSPFAM
  • Other resources with information on 2G76
  • Community annotation for 2G76 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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