2G7R Hydrolase date Feb 28, 2006
title X-Ray Structure Of The Death Domain Of The Human Mucosa Asso Lymphoid Tissue Lymphoma Translocation Protein 1
authors J.R.Walker, L.Wybenga-Groot, E.M.Newman, P.J.Finerty Jr., C.Butl J.Weigelt, M.Sundstrom, C.Arrowsmith, A.Edwards, A.Bochkarev, S. Paganon, Structural Genomics Consortium (Sgc)
compound source
Molecule: Mucosa-Associated Lymphoid Tissue Lymphoma Transl Protein 1;
Chain: A, B
Fragment: Death Domain
Synonym: Malt Lymphoma-Associated Translocation, Paracaspas
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Malt1, Mlt
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Lic
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.937 88.910 34.598 90.00 113.45 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (2g7r.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (2g7r.pdb2.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2G7R
  • Likely Quarternary Molecular Structure file(s) for 2G7R
  • Structure Factors (51 Kb)
  • Retrieve 2G7R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G7R from S2C, [Save to disk]
  • Re-refined 2g7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G7R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G7R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2G7R, from MSDmotif at EBI
  • Fold representative 2g7r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g7r] [2g7r_B] [2g7r_A]
  • SWISS-PROT database: [Q9UDY8]
  • Domain organization of [MALT1_HUMAN] by SWISSPFAM
  • Domain found in 2G7R: [DEATH ] by SMART
  • Other resources with information on 2G7R
  • Community annotation for 2G7R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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