2G8G Virus date Mar 02, 2006
title Structurally Mapping The Diverse Phenotype Of Adeno-Associat Serotype 4
authors L.Govindasamy, E.Padron, R.Mckenna, N.Muzyczka, J.A.Chiorini, M.A Mckenna
compound source
Molecule: Capsid
Chain: A
Engineered: Yes
 Organism_scientific: Adeno-Associated Virus - 4
Organism_taxid: 57579
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.263 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
339.600 319.200 285.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand D5M enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructurally mapping the diverse phenotype of adeno-associated virus serotype 4., Govindasamy L, Padron E, McKenna R, Muzyczka N, Kaludov N, Chiorini JA, Agbandje-McKenna M, J Virol. 2006 Dec;80(23):11556-70. Epub 2006 Sep 13. PMID:16971437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2g8g.pdb1.gz) 4874 Kb
  • LPC: Ligand-Protein Contacts for 2G8G
  • CSU: Contacts of Structural Units for 2G8G
  • Likely Quarternary Molecular Structure file(s) for 2G8G
  • Retrieve 2G8G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G8G from S2C, [Save to disk]
    • View 2G8G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2G8G
  • VIPERdb: visual, structural and computational analysis of 2G8G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G8G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g8g] [2g8g_A]
  • SWISS-PROT database: [O41855]
  • Domain organization of [O41855_9VIRU] by SWISSPFAM
    • Other resources with information on 2G8G
  • Community annotation for 2G8G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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