2G98 Structural Protein date Mar 06, 2006
title Human Gamma-D-Crystallin
authors S.Kmoch, J.Brynda, B.Awsav, K.Bezouska, P.Novak, P.Rezacova
compound source
Molecule: Gamma Crystallin D
Chain: A, B
Synonym: Gamma Crystallin 4
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.375 81.778 106.279 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLink between a novel human gammaD-crystallin allele and a unique cataract phenotype explained by protein crystallography., Kmoch S, Brynda J, Asfaw B, Bezouska K, Novak P, Rezacova P, Ondrova L, Filipec M, Sedlacek J, Elleder M, Hum Mol Genet 2000 Jul 22;9(12):1779-86. PMID:10915766
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2g98.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2g98.pdb2.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2G98
  • Likely Quarternary Molecular Structure file(s) for 2G98
  • Structure Factors (159 Kb)
  • Retrieve 2G98 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G98 from S2C, [Save to disk]
  • Re-refined 2g98 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G98 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G98
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2G98, from MSDmotif at EBI
  • Fold representative 2g98 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g98] [2g98_B] [2g98_A]
  • SWISS-PROT database: [P07320]
  • Domain organization of [CRGD_HUMAN] by SWISSPFAM
  • Domain found in 2G98: [XTALbg ] by SMART
  • Alignments of the sequence of 2G98 with the sequences similar proteins can be viewed for 2G98's classification [CRGD_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CRGD_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2G98
  • Community annotation for 2G98 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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