2G9T	Viral Protein	date	Mar 07, 2006
title	Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
authors	D.Su, Z.Lou, H.Yang, F.Sun, Z.Rao
compound		source
Molecule: Orf1a Polyprotein Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X; Fragment: Nsp10 Protein Engineered: Yes		Organism_scientific: Severe Acute Respiratory Syndrome-Rela Coronavirus; Organism_taxid: 694009 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: C 2 2 21	R_factor 0.217 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 159.111 321.829 161.957 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U
Primary reference	Dodecamer structure of severe acute respiratory syndrome coronavirus nonstructural protein nsp10., Su D, Lou Z, Sun F, Zhai Y, Yang H, Zhang R, Joachimiak A, Zhang XC, Bartlam M, Rao Z, J Virol. 2006 Aug;80(16):7902-8. PMID:16873247

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk] Biological Unit Coordinates (2g9t.pdb1.gz) 226 Kb Biological Unit Coordinates (2g9t.pdb2.gz) 223 Kb LPC: Ligand-Protein Contacts for 2G9T CSU: Contacts of Structural Units for 2G9T Likely Quarternary Molecular Structure file(s) for 2G9T Structure Factors (6156 Kb) Retrieve 2G9T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2G9T from S2C, [Save to disk] Re-refined 2g9t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2G9T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2G9T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2G9T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2g9t_A] [2g9t_P] [2g9t_M] [2g9t_L] [2g9t_T] [2g9t_J] [2g9t_X] [2g9t_R] [2g9t_V] [2g9t_H] [2g9t_K] [2g9t_C] [2g9t_W] [2g9t_S] [2g9t_Q] [2g9t_N] [2g9t] [2g9t_F] [2g9t_I] [2g9t_G] [2g9t_D] [2g9t_E] [2g9t_U] [2g9t_B] [2g9t_O] SWISS-PROT database: [P0C6X7] [P0C6U8] Domain organization of [R1AB_CVHSA] [R1A_CVHSA] by SWISSPFAM

Other resources with information on 2G9T

Community annotation for 2G9T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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