2GAQ Transferase date Mar 09, 2006
title Nmr Solution Structure Of The Frb Domain Of Mtor
authors M.Leone, M.Pellecchia
compound source
Molecule: Fkbp12-Rapamycin Complex-Associated Protein
Chain: A
Fragment: Frb Domain
Synonym: Fk506-Binding Protein 12- Rapamycin Complex- Associated Protein 1, Rapamycin Target Protein, Rapt1, Mammalian Target Of Rapamycin, Mtor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Frap1, Frap, Frap2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe FRB Domain of mTOR: NMR Solution Structure and Inhibitor Design(,)., Leone M, Crowell KJ, Chen J, Jung D, Chiang GG, Sareth S, Abraham RT, Pellecchia M, Biochemistry. 2006 Aug 29;45(34):10294-302. PMID:16922504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (538 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2GAQ
  • Original NMR restraints for 2GAQ from PDB
  • Retrieve 2GAQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GAQ from S2C, [Save to disk]
  • View 2GAQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GAQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GAQ, from MSDmotif at EBI
  • Fold representative 2gaq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gaq_A] [2gaq]
  • SWISS-PROT database: [P42345]
  • Domain organization of [FRAP_HUMAN] by SWISSPFAM
  • Domain found in 2GAQ: [Rapamycin_bind ] by SMART
  • Other resources with information on 2GAQ
  • Community annotation for 2GAQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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