2GBB	Isomerase	date	Mar 10, 2006
title	Crystal Structure Of Secreted Chorismate Mutase From Yersini
authors	J.E.Ladner, P.T.Reddy, B.C.Nelson, H.Robinson, S.K.Kim
compound		source
Molecule: Putative Chorismate Mutase Chain: A, B, C, D Ec: 5.4.99.5 Engineered: Yes		Organism_scientific: Yersinia Pestis Biovar Microtus Str. 9 Organism_taxid: 229193 Strain: Kim Gene: Y2828 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834 Expression_system_vector_type: Plasmid Expression_system_plasmid: De3, Groel:Ypcm Fusion Plasmid
symmetry	Space Group: C 2 2 21	R_factor 0.207 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.010 144.090 116.630 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CIT, MSE, SO4	enzyme	Isomerase E.C.5.4.99.5 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	A comparative biochemical and structural analysis of the intracellular chorismate mutase (Rv0948c) from Mycobacterium tuberculosis H(37)R(v) and the secreted chorismate mutase (y2828) from Yersinia pestis., Kim SK, Reddy SK, Nelson BC, Robinson H, Reddy PT, Ladner JE, FEBS J. 2008 Oct;275(19):4824-35. Epub 2008 Aug 22. PMID:18727669

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (2gbb.pdb1.gz) 55 Kb Biological Unit Coordinates (2gbb.pdb2.gz) 54 Kb LPC: Ligand-Protein Contacts for 2GBB CSU: Contacts of Structural Units for 2GBB Likely Quarternary Molecular Structure file(s) for 2GBB Structure Factors (924 Kb) Retrieve 2GBB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GBB from S2C, [Save to disk] Re-refined 2gbb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GBB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GBB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GBB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gbb_B] [2gbb_D] [2gbb] [2gbb_A] [2gbb_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2GBB: [CM_2 ] by SMART

Other resources with information on 2GBB

Community annotation for 2GBB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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