2GC3 Isomerase date Mar 13, 2006
title The Crystal Structure Of Phosphoglucose Isomerase From Pyroc Furiosus In Complex With Mannose 6-Phosphate And Zinc
authors J.M.Berrisford, D.W.Rice, P.J.Baker
compound source
Molecule: Glucose-6-Phosphate Isomerase
Chain: A, B
Synonym: Gpi, Phosphoglucose Isomerase, Pgi, Phosphohexose Phi;
Ec: 5.3.1.9
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Gene: Pgia
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pluw557
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.346 74.016 74.835 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand M6P, ZN enzyme Isomerase E.C.5.3.1.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEvidence Supporting a cis-enediol-based Mechanism for Pyrococcus furiosus Phosphoglucose Isomerase., Berrisford JM, Hounslow AM, Akerboom J, Hagen WR, Brouns SJ, van der Oost J, Murray IA, Michael Blackburn G, Waltho JP, Rice DW, Baker PJ, J Mol Biol. 2006 Mar 24;. PMID:16580686
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2gc3.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2GC3
  • CSU: Contacts of Structural Units for 2GC3
  • Likely Quarternary Molecular Structure file(s) for 2GC3
  • Structure Factors (178 Kb)
  • Retrieve 2GC3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GC3 from S2C, [Save to disk]
  • Re-refined 2gc3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GC3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GC3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GC3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gc3_B] [2gc3_A] [2gc3]
  • SWISS-PROT database: [P83194]
  • Domain organization of [G6PI_PYRFU] by SWISSPFAM
  • Other resources with information on 2GC3
  • Community annotation for 2GC3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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