2GC4 Oxidoreductase, Electron Transport date Mar 13, 2006
title Structural Comparison Of The Oxidized Ternary Electron Trans Complex Of Methylamine Dehydrogenase, Amicyanin And Cytochr From Paracoccus Denitrificans With The Substrate-Reduced, C Complex At 1.9 A Resolution.
authors Z.Chen, R.Durley, V.L.Davidson, F.S.Mathews
compound source
Molecule: Methylamine Dehydrogenase Heavy Chain
Chain: A, E, I, M
Synonym: Madh
Ec: 1.4.99.3
 Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266

Molecule: Methylamine Dehydrogenase Light Chain
Chain: B, F, J, N
Synonym: Madh
Ec: 1.4.99.3
Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266

Molecule: Amicyanin
Chain: C, G, K, O
Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266

Molecule: Cytochrome C-L
Chain: D, H, L, P
Synonym: Cytochrome C551i, Cytochrome C552
Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266
symmetry Space Group: P 1 21 1
R_factor 0.173 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.368 188.979 128.836 90.00 99.74 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CU, HEC, NA, TRQ enzyme Oxidoreductase E.C.1.4.99.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E, M, A, I


F, N, J, B


K, C, O, G
  • electron transfer activity


    • L, P, H, D
  • electron transfer activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (497 Kb) [Save to disk]
  • Biological Unit Coordinates (2gc4.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (2gc4.pdb2.gz) 128 Kb
  • Biological Unit Coordinates (2gc4.pdb3.gz) 129 Kb
  • Biological Unit Coordinates (2gc4.pdb4.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 2GC4
  • CSU: Contacts of Structural Units for 2GC4
  • Likely Quarternary Molecular Structure file(s) for 2GC4
  • Structure Factors (2059 Kb)
  • Retrieve 2GC4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GC4 from S2C, [Save to disk]
  • Re-refined 2gc4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GC4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GC4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GC4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gc4_G] [2gc4_H] [2gc4_K] [2gc4] [2gc4_F] [2gc4_E] [2gc4_P] [2gc4_O] [2gc4_D] [2gc4_A] [2gc4_B] [2gc4_L] [2gc4_C] [2gc4_N] [2gc4_I] [2gc4_M] [2gc4_J]
  • SWISS-PROT database: [P22364] [P29899] [P29894] [P22619]
  • Domain organization of [AMCY_PARDE] [CYCL_PARDE] [DHMH_PARDE] [DHML_PARDE] by SWISSPFAM
    • Other resources with information on 2GC4
  • Community annotation for 2GC4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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