2GC7 Oxidoreductase, Electron Transport date Mar 13, 2006
title Substrate Reduced, Copper Free Complex Of Methylamine Dehydr Amicyanin And Cytochrome C551i From Paracoccus Denitrifican
authors Z.Chen, R.Durley, V.L.Davidson, F.S.Mathews
compound source
Molecule: Methylamine Dehydrogenase Heavy Chain
Chain: A, E, I, M
Synonym: Madh
Ec: 1.4.99.3
 Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266

Molecule: Methylamine Dehydrogenase Light Chain
Chain: B, F, J, N
Synonym: Madh
Ec: 1.4.99.3
Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266

Molecule: Amicyanin
Chain: C, G, K, O
Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266

Molecule: Cytochrome C-L
Chain: D, H, L, P
Synonym: Cytochrome C551i, Cytochrome C552
Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266
symmetry Space Group: P 1 21 1
R_factor 0.171 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.323 189.127 128.906 90.00 99.75 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand HEC, NA, TRQ enzyme Oxidoreductase E.C.1.4.99.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E, M, A, I


F, N, J, B


K, C, O, G
  • electron transfer activity


    • L, P, H, D
  • electron transfer activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (498 Kb) [Save to disk]
  • Biological Unit Coordinates (2gc7.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (2gc7.pdb2.gz) 128 Kb
  • Biological Unit Coordinates (2gc7.pdb3.gz) 130 Kb
  • Biological Unit Coordinates (2gc7.pdb4.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2GC7
  • CSU: Contacts of Structural Units for 2GC7
  • Likely Quarternary Molecular Structure file(s) for 2GC7
  • Structure Factors (1998 Kb)
  • Retrieve 2GC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GC7 from S2C, [Save to disk]
  • Re-refined 2gc7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GC7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GC7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gc7_O] [2gc7_P] [2gc7_L] [2gc7_K] [2gc7_E] [2gc7_J] [2gc7_D] [2gc7_A] [2gc7_M] [2gc7_C] [2gc7_N] [2gc7_H] [2gc7] [2gc7_F] [2gc7_B] [2gc7_G] [2gc7_I]
  • SWISS-PROT database: [P22364] [P29899] [P29894] [P22619]
  • Domain organization of [AMCY_PARDE] [CYCL_PARDE] [DHMH_PARDE] [DHML_PARDE] by SWISSPFAM
    • Other resources with information on 2GC7
  • Community annotation for 2GC7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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