2GCG Oxidoreductase date Mar 14, 2006
title Ternary Crystal Structure Of Human Glyoxylate Reductasehydroxypyruvate Reductase
authors M.P.S.Booth, R.Conners, G.Rumsby, R.L.Brady
compound source
Molecule: Glyoxylate Reductasehydroxypyruvate Reductase
Chain: A, B, C, D
Ec: 1.1.1.79
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrchisb
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.568 66.877 149.780 90.00 98.22 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand DGY, NDP, SO4 enzyme Oxidoreductase E.C.1.1.1.79 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis of substrate specificity in human glyoxylate reductase/hydroxypyruvate reductase., Booth MP, Conners R, Rumsby G, Brady RL, J Mol Biol. 2006 Jun 30;360(1):178-89. Epub 2006 May 22. PMID:16756993
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (2gcg.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (2gcg.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 2GCG
  • CSU: Contacts of Structural Units for 2GCG
  • Likely Quarternary Molecular Structure file(s) for 2GCG
  • Structure Factors (576 Kb)
  • Retrieve 2GCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GCG from S2C, [Save to disk]
  • Re-refined 2gcg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GCG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GCG, from MSDmotif at EBI
  • Fold representative 2gcg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gcg] [2gcg_D] [2gcg_C] [2gcg_B] [2gcg_A]
  • SWISS-PROT database: [Q9UBQ7]
  • Domain organization of [GRHPR_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2GCG with the sequences similar proteins can be viewed for 2GCG's classification [GRHPR_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GRHPR_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2GCG
  • Community annotation for 2GCG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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