2GD8 Lyase date Mar 15, 2006
title Crystal Structure Analysis Of The Human Carbonic Anhydrase I Complex With A 2-Substituted Estradiol Bis-Sulfamate
authors G.De Simone, A.Di Fiore
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Carbonate Dehydratase II, C Carbonic Anhydrase C;
Ec: 4.2.1.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: From Human Erythrocytes
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.130 41.420 72.080 90.00 104.50 90.00
method X-Ray Diffractionresolution 1.46 Å
ligand CL, MBO, PO1, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference2-substituted estradiol bis-sulfamates, multitargeted antitumor agents: synthesis, in vitro SAR, protein crystallography, and in vivo activity., Leese MP, Leblond B, Smith A, Newman SP, Di Fiore A, De Simone G, Supuran CT, Purohit A, Reed MJ, Potter BV, J Med Chem. 2006 Dec 28;49(26):7683-96. PMID:17181151
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2gd8.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2GD8
  • CSU: Contacts of Structural Units for 2GD8
  • Likely Quarternary Molecular Structure file(s) for 2GD8
  • Structure Factors (507 Kb)
  • Retrieve 2GD8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GD8 from S2C, [Save to disk]
  • Re-refined 2gd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GD8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GD8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gd8] [2gd8_A]
  • SWISS-PROT database: [P00918]
  • Domain organization of [CAH2_HUMAN] by SWISSPFAM
  • Domain found in 2GD8: [Carb_anhydrase ] by SMART
  • Other resources with information on 2GD8
  • Community annotation for 2GD8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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