2GDG	Isomerase	date	Mar 16, 2006
title	Crystal Structure Of Covalently Modified Macrophage Inhibito
authors	P.A.Golubkov, M.L.Hackert
compound		source
Molecule: Macrophage Migration Inhibitory Factor Chain: A, B, C Synonym: Mif, Phenylpyruvate Tautomerase, Glycosylation-Inh Factor, Gif, Delayed Early Response Protein 6, Der6; Ec: 5.3.2.1 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Mif Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Gold(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11b
symmetry	Space Group: P 63	R_factor 0.147 R_Free 0.183
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.705 94.705 87.674 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand		enzyme	Isomerase E.C.5.3.2.1 BRENDA
Gene Ontology	Chain Function Process Component A, C, B chemoattractant activity
Primary reference	Inactivation of the phenylpyruvate tautomerase activity of macrophage migration inhibitory factor by 2-oxo-4-phenyl-3-butynoate., Golubkov PA, Johnson WH Jr, Czerwinski RM, Person MD, Wang SC, Whitman CP, Hackert ML, Bioorg Chem. 2006 Jun 13;. PMID:16780921

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk] Biological Unit Coordinates (2gdg.pdb1.gz) 123 Kb CSU: Contacts of Structural Units for 2GDG Likely Quarternary Molecular Structure file(s) for 2GDG Structure Factors (1234 Kb) Retrieve 2GDG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GDG from S2C, [Save to disk] Re-refined 2gdg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GDG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GDG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GDG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gdg] [2gdg_C] [2gdg_B] [2gdg_A] SWISS-PROT database: [P34884] Domain organization of [MIF_MOUSE] by SWISSPFAM

Other resources with information on 2GDG

Community annotation for 2GDG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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