2GF2 Oxidoreductase date Mar 21, 2006
title Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase
authors E.Papagrigoriou, E.Salah, A.P.Turnbull, C.Smee, N.Burgess, O.Gile Delft, F.Gorrec, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, A.M.Edw U.Oppermann, Structural Genomics Consortium (Sgc)
compound source
Molecule: 3-Hydroxyisobutyrate Dehydrogenase
Chain: A, B, C, D
Synonym: Hibadh
Ec: 1.1.1.31
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hibadh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.053 122.745 200.397 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.38 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (2gf2.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (2gf2.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (2gf2.pdb3.gz) 171 Kb
  • CSU: Contacts of Structural Units for 2GF2
  • Likely Quarternary Molecular Structure file(s) for 2GF2
  • Structure Factors (768 Kb)
  • Retrieve 2GF2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GF2 from S2C, [Save to disk]
  • Re-refined 2gf2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GF2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GF2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GF2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gf2_A] [2gf2] [2gf2_C] [2gf2_B] [2gf2_D]
  • SWISS-PROT database: [P31937]
  • Domain organization of [3HIDH_HUMAN] by SWISSPFAM
  • Other resources with information on 2GF2
  • Community annotation for 2GF2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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