2GGF Translation date Mar 24, 2006
title Solution Structure Of The Ma3 Domain Of Human Programmed Cel
authors T.Nagata, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoy Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Programmed Cell Death 4, Isoform 1
Chain: A
Fragment: Ma3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdcd4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-19
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (719 Kb) [Save to disk]
  • Biological Unit Coordinates (2ggf.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 2GGF
  • Retrieve 2GGF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GGF from S2C, [Save to disk]
  • View 2GGF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GGF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GGF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ggf_A] [2ggf]
  • SWISS-PROT database: [Q53EL6]
  • Domain organization of [PDCD4_HUMAN] by SWISSPFAM
  • Domain found in 2GGF: [MA3 ] by SMART
  • Other resources with information on 2GGF
  • Community annotation for 2GGF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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