2GHT Hydrolase date Mar 27, 2006
title Ctd-Specific Phosphatase Scp1 In Complex With Peptide From C-Terminal Domain Of Rna Polymerase II
authors Y.Zhang, J.P.Noel
compound source
Molecule: Carboxy-Terminal Domain Rna Polymerase II Polypeptide A Small Phosphatase 1;
Chain: A, B
Synonym: Nuclear Lim Interactor-Interacting Factor 3, Nli- Interacting Factor 3, Nli-If;
Ec: 3.1.3.16
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctdsp1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28 Derivative

Molecule: Dna-Directed Rna Polymerase II Largest Subunit
Chain: C, D
Synonym: Rpb1
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.216 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.916 78.787 62.948 90.00 112.08 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MG, SEP enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDeterminants for dephosphorylation of the RNA polymerase II C-terminal domain by Scp1., Zhang Y, Kim Y, Genoud N, Gao J, Kelly JW, Pfaff SL, Gill GN, Dixon JE, Noel JP, Mol Cell. 2006 Dec 8;24(5):759-70. PMID:17157258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2ght.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (2ght.pdb2.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 2GHT
  • CSU: Contacts of Structural Units for 2GHT
  • Likely Quarternary Molecular Structure file(s) for 2GHT
  • Structure Factors (496 Kb)
  • Retrieve 2GHT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GHT from S2C, [Save to disk]
  • Re-refined 2ght structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GHT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GHT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GHT, from MSDmotif at EBI
  • Fold representative 2ght from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ght] [2ght_A] [2ght_C] [2ght_D] [2ght_B]
  • SWISS-PROT database: [Q9GZU7] [P24928]
  • Domain organization of [CTDS1_HUMAN] [RPB1_HUMAN] by SWISSPFAM
  • Domain found in 2GHT: [CPDc ] by SMART
  • Other resources with information on 2GHT
  • Community annotation for 2GHT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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