2GIG Hydrolase Dna date Mar 28, 2006
title Alteration Of Sequence Specificity Of The Type II Restrictio Endonuclease Hincii Through An Indirect Readout Mechanism
authors N.C.Horton, H.K.Joshi, C.Etzkorn, L.Chatwell, J.Bitinaite
compound source
Molecule: 5'-D(Gpcpcpgpgptpcpgpapcpcpgpgpc)-3
Chain: E, F
Engineered: Yes
Synthetic: Yes

Molecule: Type II Restriction Enzyme Hincii
Chain: A, B
Synonym: Endonuclease Hincii, R.Hincii
Ec: 3.1.21.4
Engineered: Yes
Mutation: Yes

Organism_scientific: Haemophilus Influenzae
Organism_taxid: 727
Gene: Hinciir
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Er2393
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pccr101hincii.R
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.420 90.990 67.330 90.00 104.10 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand NA enzyme Hydrolase E.C.3.1.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceAlteration of sequence specificity of the type II restriction endonuclease HincII through an indirect readout mechanism., Joshi HK, Etzkorn C, Chatwell L, Bitinaite J, Horton NC, J Biol Chem. 2006 Aug 18;281(33):23852-69. Epub 2006 May 4. PMID:16675462
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (2gig.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 2GIG
  • CSU: Contacts of Structural Units for 2GIG
  • Likely Quarternary Molecular Structure file(s) for 2GIG
  • Structure Factors (370 Kb)
  • Retrieve 2GIG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GIG from S2C, [Save to disk]
  • Re-refined 2gig structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GIG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GIG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GIG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gig_B] [2gig] [2gig_F] [2gig_E] [2gig_A]
  • SWISS-PROT database: [P44413]
  • Domain organization of [T2D2_HAEIN] by SWISSPFAM
  • Other resources with information on 2GIG
  • Community annotation for 2GIG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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