2GIU Transcription Regulator date Mar 29, 2006
title Human Estrogen Receptor Beta Ligand-Binding Domain In Complex With Compound 45
authors P.M.D.Fitzgerald, N.Sharma
compound source
Molecule: Estrogen Receptor Beta
Chain: A
Fragment: Ligand-Binding Domain (Residues 260-500)
Synonym: Er-Beta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.530 64.530 251.160 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand FBR BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe discovery of tetrahydrofluorenones as a new class of estrogen receptor beta-subtype selective ligands., Wilkening RR, Ratcliffe RW, Tynebor EC, Wildonger KJ, Fried AK, Hammond ML, Mosley RT, Fitzgerald PM, Sharma N, McKeever BM, Nilsson S, Carlquist M, Thorsell A, Locco L, Katz R, Frisch K, Birzin ET, Wilkinson HA, Mitra S, Cai S, Hayes EC, Schaeffer JM, Rohrer SP, Bioorg Med Chem Lett. 2006 Jul 1;16(13):3489-94. Epub 2006 May 2. PMID:16632357
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2giu.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 2GIU
  • CSU: Contacts of Structural Units for 2GIU
  • Likely Quarternary Molecular Structure file(s) for 2GIU
  • Structure Factors (116 Kb)
  • Retrieve 2GIU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GIU from S2C, [Save to disk]
  • Re-refined 2giu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GIU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GIU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GIU, from MSDmotif at EBI
  • Fold representative 2giu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2giu] [2giu_A]
  • SWISS-PROT database: [Q92731]
  • Domain organization of [ESR2_HUMAN] by SWISSPFAM
  • Domain found in 2GIU: [HOLI ] by SMART
  • Alignments of the sequence of 2GIU with the sequences similar proteins can be viewed for 2GIU's classification [ESR2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ESR2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2GIU
  • Community annotation for 2GIU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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