2GJ6 Immune System date Mar 30, 2006
title The Complex Between Tcr A6 And Human Class I Mhc Hla-A2 With Modified Htlv-1 Tax (Y5k-4-[3-Indolyl]-Butyric Acid) Peptid
authors O.Y.Borbulevych, B.M.Baker
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Beta-2-Microglobulin, Contains: Beta-2-Microglobu Variant Pi 5.3;
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m

Molecule: Modified Htlv-1 Tax (Y5k-Iba) Peptide, Chain C
Chain: C
Fragment: Htlv-1 Tax Peptide
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapie (Human);

Molecule: A6-Tcr
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: A6-Tcr
Chain: E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
223.846 49.019 94.170 90.00 90.34 90.00
method X-Ray Diffractionresolution 2.56 Å
ligand 3IB, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceT Cell Receptor Recognition via Cooperative Conformational Plasticity., Gagnon SJ, Borbulevych OY, Davis-Harrison RL, Turner RV, Damirjian M, Wojnarowicz A, Biddison WE, Baker BM, J Mol Biol. 2006 Oct 13;363(1):228-43. Epub 2006 Aug 22. PMID:16962135
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (2gj6.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 2GJ6
  • CSU: Contacts of Structural Units for 2GJ6
  • Likely Quarternary Molecular Structure file(s) for 2GJ6
  • Structure Factors (457 Kb)
  • Retrieve 2GJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GJ6 from S2C, [Save to disk]
  • Re-refined 2gj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GJ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GJ6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gj6_B] [2gj6_C] [2gj6_D] [2gj6] [2gj6_E] [2gj6_A]
  • SWISS-PROT database: [P01892] [P61769] [P01848] [P01850]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] [TCA_HUMAN] [TCB_HUMAN] by SWISSPFAM
  • Domains found in 2GJ6: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 2GJ6
  • Community annotation for 2GJ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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