2GJK	Hydrolase	date	Mar 31, 2006
title	Structural And Functional Insights Into The Human Upf1 Helic
authors	Z.Cheng, D.Muhlrad, R.Parker, H.Song
compound		source
Molecule: Regulator Of Nonsense Transcripts 1 Chain: A Fragment: Helicase Core Domain(Residues 295-914) Synonym: Atp-Dependent Helicase Rent1, Nonsense Mrna Reduci 1, Norf1, Up-Frameshift Suppressor 1 Homolog, Hupf1; Ec: 3.6.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl-21 Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: P 43 21 2	R_factor 0.245 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 188.979 188.979 44.872 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	ANP, MG	enzyme	Hydrolase E.C.3.6.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and functional insights into the human Upf1 helicase core., Cheng Z, Muhlrad D, Lim MK, Parker R, Song H, EMBO J. 2006 Dec 7;. PMID:17159905

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (2gjk.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 2GJK CSU: Contacts of Structural Units for 2GJK Likely Quarternary Molecular Structure file(s) for 2GJK Structure Factors (204 Kb) Retrieve 2GJK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GJK from S2C, [Save to disk] Re-refined 2gjk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GJK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GJK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GJK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gjk] [2gjk_A] SWISS-PROT database: [Q92900] Domain organization of [RENT1_HUMAN] by SWISSPFAM

Other resources with information on 2GJK

Community annotation for 2GJK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---