2GLI Transcription Dna date Nov 09, 1993
title Five-Finger Glidna Complex
authors N.P.Pavletich, C.O.Pabo
compound source
Molecule: Dna (5'- D(Tptptpcpgptpcptptpgpgpgptpgpgptpcpcpap 3');
Chain: C
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'- D(Apcpgptpgpgpapcpcpapcpcpcpapapgpapcpgp 3');
Chain: D
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Five-Finger Gli)
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gli Oncogene
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_gene: Gli Oncogene
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.000 50.200 45.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CO enzyme
note 2GLI is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers., Pavletich NP, Pabo CO, Science 1993 Sep 24;261(5129):1701-7. PMID:8378770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2gli.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2GLI
  • CSU: Contacts of Structural Units for 2GLI
  • Likely Quarternary Molecular Structure file(s) for 2GLI
  • Retrieve 2GLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GLI from S2C, [Save to disk]
    • View 2GLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GLI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GLI, from MSDmotif at EBI
  • Genome occurence of 2GLI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2glia1, region A:103-134 [Jmol] [rasmolscript] [script source]
        - Domain d2glia2, region A:135-167 [Jmol] [rasmolscript] [script source]
        - Domain d2glia3, region A:168-197 [Jmol] [rasmolscript] [script source]
        - Domain d2glia4, region A:198-228 [Jmol] [rasmolscript] [script source]
        - Domain d2glia5, region A:229-257 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gli_D] [2gli_C] [2gli_A] [2gli]
  • SWISS-PROT database: [P08151]
  • Domain organization of [GLI1_HUMAN] by SWISSPFAM
  • Domain found in 2GLI: [ZnF_C2H2 ] by SMART
    • Other resources with information on 2GLI
  • Community annotation for 2GLI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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