2GLJ Hydrolase date Apr 04, 2006
title Crystal Structure Of Aminopeptidase I From Clostridium Acetobutylicum
authors T.Min, L.Shapiro, S.K.Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Probable M18-Family Aminopeptidase 1
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X;
Ec: 3.4.11.-
Engineered: Yes
Organism_scientific: Clostridium Acetobutylicum
Organism_taxid: 1488
Gene: Apea
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.250 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.708 129.680 222.728 89.88 90.00 116.68
method X-Ray Diffractionresolution 3.20 Å
ligand MN, MSE enzyme Hydrolase E.C.3.4.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1874 Kb) [Save to disk]
  • Biological Unit Coordinates (2glj.pdb1.gz) 928 Kb
  • Biological Unit Coordinates (2glj.pdb2.gz) 932 Kb
  • LPC: Ligand-Protein Contacts for 2GLJ
  • CSU: Contacts of Structural Units for 2GLJ
  • Likely Quarternary Molecular Structure file(s) for 2GLJ
  • Structure Factors (2505 Kb)
  • Retrieve 2GLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GLJ from S2C, [Save to disk]
  • Re-refined 2glj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GLJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GLJ, from MSDmotif at EBI
  • Fold representative 2glj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2glj_X] [2glj_O] [2glj_W] [2glj_C] [2glj_Q] [2glj_K] [2glj_L] [2glj_B] [2glj_U] [2glj_J] [2glj_R] [2glj_N] [2glj_D] [2glj_E] [2glj_V] [2glj_F] [2glj_P] [2glj_I] [2glj_T] [2glj_S] [2glj_M] [2glj] [2glj_H] [2glj_G] [2glj_A]
  • SWISS-PROT database: [Q97K30]
  • Domain organization of [APEA_CLOAB] by SWISSPFAM
  • Other resources with information on 2GLJ
  • Community annotation for 2GLJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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