2GLO	Transcription Dna	date	Apr 05, 2006
title	Solution Structure Of The Brinker Dna Binding Domain In Comp The Omb Enhancer
authors	F.Cordier, B.Hartmann, M.Rogowski, M.Affolter, S.Grzesiek
compound		source
Molecule: 5'-D(Tpgpapgpgpcpgptpcpapapc)-3' Chain: B Synonym: Dna Optomotor Blind (Omb) Enhancer Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Gptptpgpapcpgpcpcptpcpa)-3' Chain: C Synonym: Dna Optomotor Blind (Omb) Enhancer Engineered: Yes		Synthetic: Yes
Molecule: Brinker Cg9653-Pa Chain: A Fragment: Brinker Dna Binding Domain (Residues 43-101) Synonym: Brinker Nuclear Repressor Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Brinker Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-22b(+)
method	Solution NMR
note	2GLO is a representative structure
Primary reference	DNA recognition by the brinker repressor - an extreme case of coupling between binding and folding., Cordier F, Hartmann B, Rogowski M, Affolter M, Grzesiek S, J Mol Biol. 2006 Aug 25;361(4):659-72. Epub 2006 Jul 7. PMID:16876822

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (648 Kb) [Save to disk] Biological Unit Coordinates (2glo.pdb1.gz) 32 Kb CSU: Contacts of Structural Units for 2GLO Original NMR restraints for 2GLO from PDB Retrieve 2GLO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GLO from S2C, [Save to disk]

View 2GLO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GLO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GLO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2glo] [2glo_B] [2glo_C] [2glo_A] SWISS-PROT database: [Q9XTN4] Domain organization of [Q9XTN4_DROME] by SWISSPFAM

Other resources with information on 2GLO

Community annotation for 2GLO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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