2GMG Dna Binding Protein date Apr 06, 2006
title Solution Nmr Structure Of Protein Pf0610 From Pyrococcus Fur Northeast Structural Genomics Consortium Target Pfg3
authors X.Wang, H.S.Lee, M.W.Adams, Northeast Structural Genomics Conso (Nesg), G.T.Montelione, J.H.Prestegard
compound source
Molecule: Hypothetical Protein Pf0610
Chain: A
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 186497
Strain: Dsm 3638
Gene: Ae010183
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-24d
methodSolution NMR
Primary referencePF0610, a novel winged helix-turn-helix variant possessing a rubredoxin-like Zn ribbon motif from the hyperthermophilic archaeon, Pyrococcus furiosus., Wang X, Lee HS, Sugar FJ, Jenney FE Jr, Adams MW, Prestegard JH, Biochemistry. 2007 Jan 23;46(3):752-61. PMID:17223696
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (2gmg.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2GMG
  • Original NMR restraints for 2GMG from PDB
  • Retrieve 2GMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GMG from S2C, [Save to disk]
    • View 2GMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GMG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GMG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gmg] [2gmg_A]
  • SWISS-PROT database: [Q8U362]
  • Domain organization of [Q8U362_PYRFU] by SWISSPFAM
    • Other resources with information on 2GMG
  • Community annotation for 2GMG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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