OCA Atlas for 2GNN

2GNN

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BEN, CL, GOL, NAG, SO4, TRS

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B	growth factor activity

Primary reference

Crystal structure of the Orf virus NZ2 variant of vascular endothelial growth factor-E. Implications for receptor specificity., Pieren M, Prota AE, Ruch C, Kostrewa D, Wagner A, Biedermann K, Winkler FK, Ballmer-Hofer K, J Biol Chem. 2006 Jul 14;281(28):19578-87. Epub 2006 May 3. PMID:16672228

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]

Biological Unit Coordinates (2gnn.pdb1.gz) 34 Kb

Biological Unit Coordinates (2gnn.pdb2.gz) 32 Kb

Biological Unit Coordinates (2gnn.pdb3.gz) 64 Kb

LPC: Ligand-Protein Contacts for 2GNN

CSU: Contacts of Structural Units for 2GNN

Likely Quarternary Molecular Structure file(s) for 2GNN

Structure Factors (397 Kb)

Retrieve 2GNN in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2GNN from S2C, [Save to disk]

Re-refined 2gnn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GNN in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gnn] [2gnn_A] [2gnn_B] [2gnn_C] [2gnn_D]

SWISS-PROT database: [P52584]

Domain found in 2GNN: [PDGF ] by SMART

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