2GPH Transferase date Apr 17, 2006
title Docking Motif Interactions In The Map Kinase Erk2
authors T.Zhou, L.Sun, J.Humphreys, E.J.Goldsmith
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Extracellular Signal-Regulated Kinase 2, Erk-2, Mi Activated Protein Kinase 2, Map Kinase 2, Mapk 2, P42-Mapk,
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Erk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 7
Chain: B
Synonym: Protein-Tyrosine Phosphatase Lc-Ptp, Hematopoietic Tyrosine Phosphatase, Heptp;
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.981 66.342 116.112 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • MAP kinase activity
  • MAP kinase kinase activity
  • regulation of cellular pH

  • Primary referenceDocking interactions induce exposure of activation loop in the MAP kinase ERK2., Zhou T, Sun L, Humphreys J, Goldsmith EJ, Structure. 2006 Jun;14(6):1011-9. PMID:16765894
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2gph.pdb1.gz) 65 Kb
  • CSU: Contacts of Structural Units for 2GPH
  • Likely Quarternary Molecular Structure file(s) for 2GPH
  • Structure Factors (392 Kb)
  • Retrieve 2GPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GPH from S2C, [Save to disk]
  • Re-refined 2gph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GPH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GPH, from MSDmotif at EBI
  • Fold representative 2gph from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gph_A] [2gph] [2gph_B]
  • SWISS-PROT database: [P63086] [P35236]
  • Domain organization of [MK01_RAT] [PTN7_HUMAN] by SWISSPFAM
  • Domain found in 2GPH: [S_TKc ] by SMART
  • Other resources with information on 2GPH
  • Community annotation for 2GPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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