2GS0	Transcription	date	Apr 25, 2006
title	Nmr Structure Of The Complex Between The Ph Domain Of The Tfb1 Subunit From Tfiih And The Activation Domain Of P53
authors	P.Di Lello, T.N.Jones, B.D.Nguyen, P.Legault, J.G.Omichinski
compound		source
Molecule: Rna Polymerase II Transcription Factor B Subunit 1; Chain: A Synonym: Rna Polymerase II Transcription Factor B P73 Subunit, Rna Polymerase II Transcription Factor B 73 Kda Subunit; Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Tfb1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Topp2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t
Molecule: Cellular Tumor Antigen P53 Chain: B Synonym: Tumor Suppressor P53 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tp53 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Topp2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2tk
method	Solution NMR
Primary reference	Structure of the Tfb1/p53 complex: Insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53., Di Lello P, Jenkins LM, Jones TN, Nguyen BD, Hara T, Yamaguchi H, Dikeakos JD, Appella E, Legault P, Omichinski JG, Mol Cell. 2006 Jun 23;22(6):731-40. PMID:16793543

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (684 Kb) [Save to disk] CSU: Contacts of Structural Units for 2GS0 Original NMR restraints for 2GS0 from PDB Retrieve 2GS0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GS0 from S2C, [Save to disk]

View 2GS0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2GS0

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2GS0, from MSDmotif at EBI Fold representative 2gs0 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gs0_A] [2gs0_B] SWISS-PROT database: [P04637] [P32776] Domain organization of [P53_HUMAN] [TFB1_YEAST] by SWISSPFAM Alignments of the sequence of 2GS0 with the sequences similar proteins can be viewed for 2GS0's classification [P53_HUMAN] [TFB1_YEAST] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] [TFB1_YEAST] at ProtoMap. Click on the Cluster number.

Other resources with information on 2GS0

Community annotation for 2GS0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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