2GT6 Metal Transport date Apr 27, 2006
title Solution Structure Of Human Cu(I) Sco1
authors L.Banci, I.Bertini, V.Calderone, S.Ciofi-Baffoni, S.Mangani, P.Palumaa, M.Martinelli, S.Wang, Structural Proteomics In Europe (Spine)
compound source
Molecule: Sco1 Protein Homolog, Mitochondrial
Chain: A
Fragment: C-Terminal Domain (Residues 132-301)
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sco1, Scod1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3 Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg-30a
methodSolution NMR
ligand CU1 enzyme
Primary referenceA hint for the function of human Sco1 from different structures., Banci L, Bertini I, Calderone V, Ciofi-Baffoni S, Mangani S, Martinelli M, Palumaa P, Wang S, Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8595-600. Epub 2006 May 30. PMID:16735468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2GT6
  • CSU: Contacts of Structural Units for 2GT6
  • Original NMR restraints for 2GT6 from PDB
  • Retrieve 2GT6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GT6 from S2C, [Save to disk]
    • View 2GT6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2GT6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GT6, from MSDmotif at EBI
  • Fold representative 2gt6 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gt6_A]
  • SWISS-PROT database: [O75880]
  • Domain organization of [SCO1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2GT6 with the sequences similar proteins can be viewed for 2GT6's classification [SCO1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [SCO1_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2GT6
  • Community annotation for 2GT6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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