2GTR Structural Genomics, Unknown Function date Apr 28, 2006
title Human Chromodomain Y-Like Protein
authors J.Min, H.Wu, T.Antoshenko, P.Loppnau, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, A.N.Plotnikov, Struct Genomics Consortium (Sgc)
compound source
Molecule: Chromodomain Y-Like Protein
Chain: A, B, C
Synonym: Cdy-Like
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdyl, Cdyl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.189 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.207 132.739 100.361 90.00 102.92 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (2gtr.pdb1.gz) 128 Kb
  • CSU: Contacts of Structural Units for 2GTR
  • Likely Quarternary Molecular Structure file(s) for 2GTR
  • Structure Factors (1149 Kb)
  • Retrieve 2GTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GTR from S2C, [Save to disk]
  • Re-refined 2gtr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GTR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GTR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GTR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gtr_A] [2gtr_B] [2gtr] [2gtr_C]
  • SWISS-PROT database: [Q9Y232]
  • Domain organization of [CDYL1_HUMAN] by SWISSPFAM
    • Other resources with information on 2GTR
  • Community annotation for 2GTR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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