2GU8 Signaling Protein,Transferase Inhibitor date Apr 28, 2006
title Discovery Of 2-Pyrimidyl-5-Amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies
authors J.M.Murray
compound source
Molecule: Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit;
Chain: A
Fragment: Catalytic Subunit
Synonym: Pka C-Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inhibitor Of Camp-Dependent Protein Kinase
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.261
length a length b length c angle alpha angle beta angle gamma
72.720 75.165 79.844 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 796, SEP, TPO enzyme Transferase E.C. BRENDA

Primary referenceDiscovery of 2-pyrimidyl-5-amidothiophenes as potent inhibitors for AKT: synthesis and SAR studies., Lin X, Murray JM, Rico AC, Wang MX, Chu DT, Zhou Y, Del Rosario M, Kaufman S, Ma S, Fang E, Crawford K, Jefferson AB, Bioorg Med Chem Lett. 2006 Aug 15;16(16):4163-8. Epub 2006 Jun 9. PMID:16765046
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (2gu8.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2GU8
  • CSU: Contacts of Structural Units for 2GU8
  • Likely Quarternary Molecular Structure file(s) for 2GU8
  • Structure Factors (327 Kb)
  • Retrieve 2GU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GU8 from S2C, [Save to disk]
  • Re-refined 2gu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GU8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GU8, from MSDmotif at EBI
  • Fold representative 2gu8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gu8_A] [2gu8] [2gu8_C]
  • SWISS-PROT database: [P17612]
  • Domain organization of [KAPCA_HUMAN] by SWISSPFAM
  • Domains found in 2GU8: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 2GU8
  • Community annotation for 2GU8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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