2GUX Selenomethionine derivative of griffithsin date
authors Ziolkowska, N.E., Wlodawer, A.
compound source
symmetry
R_factor
R_Free 0.2541
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDomain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding., Ziolkowska NE, O'Keefe BR, Mori T, Zhu C, Giomarelli B, Vojdani F, Palmer KE, McMahon JB, Wlodawer A, Structure. 2006 Jul;14(7):1127-35. PMID:16843894
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (2gux.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2GUX
  • CSU: Contacts of Structural Units for 2GUX
  • Likely Quarternary Molecular Structure file(s) for 2GUX
  • Structure Factors (162 Kb)
  • Retrieve 2GUX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GUX from S2C, [Save to disk]
  • Re-refined 2gux structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GUX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GUX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GUX, from MSDmotif at EBI
  • Fold representative 2gux from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gux] [2gux_A]
  • SWISS-PROT database: [P84801]
  • Domain organization of [GRFIN_GRISQ] by SWISSPFAM
  • Domain found in 2GUX: [Jacalin ] by SMART
  • Other resources with information on 2GUX
  • Community annotation for 2GUX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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