2GVG Transferase date May 02, 2006
title Crystal Structure Of Human Nmprtase And Its Complex With Nmn
authors J.A.Khan, X.Tao, L.Tong
compound source
Molecule: Nicotinamide Phosphoribosyltransferase
Chain: A, B, C, D, E, F
Ec: 2.4.2.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nampt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
253.070 101.367 148.200 90.00 125.48 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand NMN, PO4 enzyme Transferase E.C.2.4.2.12 BRENDA
note 2GVG is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceMolecular basis for the inhibition of human NMPRTase, a novel target for anticancer agents., Khan JA, Tao X, Tong L, Nat Struct Mol Biol. 2006 Jul;13(7):582-8. Epub 2006 Jun 18. PMID:16783377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (485 Kb) [Save to disk]
  • Biological Unit Coordinates (2gvg.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (2gvg.pdb2.gz) 162 Kb
  • Biological Unit Coordinates (2gvg.pdb3.gz) 166 Kb
  • Biological Unit Coordinates (2gvg.pdb4.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 2GVG
  • CSU: Contacts of Structural Units for 2GVG
  • Likely Quarternary Molecular Structure file(s) for 2GVG
  • Structure Factors (2154 Kb)
  • Retrieve 2GVG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GVG from S2C, [Save to disk]
  • Re-refined 2gvg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GVG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GVG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GVG, from MSDmotif at EBI
  • Fold representative 2gvg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gvg_F] [2gvg_B] [2gvg_A] [2gvg_D] [2gvg_E] [2gvg_C] [2gvg]
  • SWISS-PROT database: [P43490]
  • Domain organization of [NAMPT_HUMAN] by SWISSPFAM
  • Other resources with information on 2GVG
  • Community annotation for 2GVG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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