2GVJ Transferase date May 02, 2006
title Crystal Structure Of Human Nmprtase In Complex With Fk866
authors J.A.Khan, X.Tao, L.Tong
compound source
Molecule: Nicotinamide Phosphoribosyltransferase
Chain: A, B
Synonym: Namprtase, Nampt, Pre-B Cell-Enhancing Factor, Pre Colony-Enhancing Factor 1, Visfatin;
Ec: 2.4.2.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nampt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.247 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.780 105.896 83.427 90.00 96.45 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand DGB, MSE enzyme Transferase E.C.2.4.2.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular basis for the inhibition of human NMPRTase, a novel target for anticancer agents., Khan JA, Tao X, Tong L, Nat Struct Mol Biol. 2006 Jul;13(7):582-8. Epub 2006 Jun 18. PMID:16783377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (2gvj.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 2GVJ
  • CSU: Contacts of Structural Units for 2GVJ
  • Likely Quarternary Molecular Structure file(s) for 2GVJ
  • Structure Factors (905 Kb)
  • Retrieve 2GVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GVJ from S2C, [Save to disk]
  • Re-refined 2gvj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GVJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GVJ, from MSDmotif at EBI
  • Fold representative 2gvj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gvj_B] [2gvj] [2gvj_A]
  • SWISS-PROT database: [P43490]
  • Domain organization of [NAMPT_HUMAN] by SWISSPFAM
  • Other resources with information on 2GVJ
  • Community annotation for 2GVJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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