2GWW Cell Adhesion, Structural Protein date May 07, 2006
title Human Vinculin (Head Domain, Vh1, Residues 1-258) In Complex With Shigella'S Ipaa Vinculin Binding Site (Residues 602-633)
authors T.Izard
compound source
Molecule: Vinculin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ipaa
Chain: B
Engineered: Yes

Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 3 2
R_factor 0.229 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.310 151.310 151.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.72 Å
Primary referenceShigella applies molecular mimicry to subvert vinculin and invade host cells., Izard T, Tran Van Nhieu G, Bois PR, J Cell Biol. 2006 Nov 6;175(3):465-75. PMID:17088427
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2gww.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2gww.pdb2.gz) 277 Kb
  • Biological Unit Coordinates (2gww.pdb3.gz) 140 Kb
  • CSU: Contacts of Structural Units for 2GWW
  • Likely Quarternary Molecular Structure file(s) for 2GWW
  • Retrieve 2GWW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GWW from S2C, [Save to disk]
  • View 2GWW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GWW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GWW, from MSDmotif at EBI
  • Fold representative 2gww from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gww] [2gww_A] [2gww_B]
  • SWISS-PROT database: [P18010] [P18206]
  • Domain organization of [IPAA_SHIFL] [VINC_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2GWW with the sequences similar proteins can be viewed for 2GWW's classification [IPAA_SHIFL] [VINC_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [IPAA_SHIFL] [VINC_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2GWW
  • Community annotation for 2GWW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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