2GX8 Structural Genomics, Unknown Function date May 08, 2006
title The Crystal Structure Of Bacillus Cereus Protein Related To
authors G.Minasov, J.S.Brunzelle, L.Shuvalova, I.I.Vorontsov, F.R.Collar A.Joachimiak, W.F.Anderson, Midwest Center For Structural Gen (Mcsg)
compound source
Molecule: Nif3-Related Protein
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Bacillus Cereus
Organism_taxid: 226900
Strain: Atcc 14579
Gene: Aap11199
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 32 2 1
R_factor 0.196 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.036 95.036 260.732 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand EPE, TRS, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe 2.2 A resolution crystal structure of Bacillus cereus Nif3-family protein YqfO reveals a conserved dimetal-binding motif and a regulatory domain., Godsey MH, Minasov G, Shuvalova L, Brunzelle JS, Vorontsov II, Collart FR, Anderson WF, Protein Sci. 2007 Jul;16(7):1285-93. PMID:17586767
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (2gx8.pdb1.gz) 363 Kb
  • LPC: Ligand-Protein Contacts for 2GX8
  • CSU: Contacts of Structural Units for 2GX8
  • Likely Quarternary Molecular Structure file(s) for 2GX8
  • Structure Factors (514 Kb)
  • Retrieve 2GX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GX8 from S2C, [Save to disk]
  • Re-refined 2gx8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GX8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GX8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gx8_C] [2gx8_B] [2gx8_A] [2gx8]
  • SWISS-PROT database: [Q818H0]
  • Domain organization of [Q818H0_BACCR] by SWISSPFAM
    • Other resources with information on 2GX8
  • Community annotation for 2GX8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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