2GYP Diabetes mellitus due to a frustrated Schellman motif in HNF-1a date
authors Narayana, N., Phillips, N.B., Hua, Q.X., Jia, W., Weiss, M.A.
compound source
symmetry
R_factor
R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand DAL, NLE enzyme
Primary referenceDiabetes mellitus due to misfolding of a beta-cell transcription factor: stereospecific frustration of a Schellman motif in HNF-1alpha., Narayana N, Phillips NB, Hua QX, Jia W, Weiss MA, J Mol Biol. 2006 Sep 22;362(3):414-29. Epub 2006 Jul 27. PMID:16930618
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (2gyp.pdb1.gz) 8 Kb
  • Biological Unit Coordinates (2gyp.pdb2.gz) 9 Kb
  • Biological Unit Coordinates (2gyp.pdb3.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2GYP
  • CSU: Contacts of Structural Units for 2GYP
  • Likely Quarternary Molecular Structure file(s) for 2GYP
  • Structure Factors (61 Kb)
  • Retrieve 2GYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GYP from S2C, [Save to disk]
  • Re-refined 2gyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GYP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GYP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gyp_A] [2gyp_B] [2gyp]
  • SWISS-PROT database: [P20823]
  • Domain organization of [HNF1A_HUMAN] by SWISSPFAM
  • Other resources with information on 2GYP
  • Community annotation for 2GYP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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