2GYR Hormone Growth Factor date May 09, 2006
title Crystal Structure Of Human Artemin
authors X.Q.Wang
compound source
Molecule: Neurotrophic Factor Artemin, Isoform 3
Chain: A, B, C, D, E, F
Fragment: N-Terminal Truncated
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Artn
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 65
R_factor 0.308 R_Free 0.353
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.200 94.200 219.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructure of artemin complexed with its receptor GFRalpha3: convergent recognition of glial cell line-derived neurotrophic factors., Wang X, Baloh RH, Milbrandt J, Garcia KC, Structure. 2006 Jun;14(6):1083-92. PMID:16765900
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2gyr.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2gyr.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (2gyr.pdb3.gz) 31 Kb
  • CSU: Contacts of Structural Units for 2GYR
  • Likely Quarternary Molecular Structure file(s) for 2GYR
  • Structure Factors (412 Kb)
  • Retrieve 2GYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GYR from S2C, [Save to disk]
  • Re-refined 2gyr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GYR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GYR, from MSDmotif at EBI
  • Fold representative 2gyr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gyr_C] [2gyr_A] [2gyr_D] [2gyr_F] [2gyr] [2gyr_B] [2gyr_E]
  • SWISS-PROT database: [Q5T4W7]
  • Domain organization of [ARTN_HUMAN] by SWISSPFAM
  • Domain found in 2GYR: [TGFB ] by SMART
  • Other resources with information on 2GYR
  • Community annotation for 2GYR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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