2GZD Protein Transport date May 11, 2006
title Crystal Structure Of Rab11 In Complex With Rab11-Fip2
authors A.R.Khan
compound source
Molecule: Ras-Related Protein Rab-11a
Chain: A, B
Fragment: G Protein Domain
Synonym: Rab-11, Yl8
Ec: 3.6.5.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab11a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28b

Molecule: Rab11 Family-Interacting Protein 2
Chain: C, D
Fragment: Rab11-Fip2 Rab-Binding Domain
Synonym: Rab11-Fip2, Nrip11
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal-C2x
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.364 91.149 113.099 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.44 Å
ligand GTP, MG, MSE enzyme Hydrolase E.C.3.6.5.2 BRENDA
Primary referenceCrystal structure of rab11 in complex with rab11 family interacting protein 2., Jagoe WN, Lindsay AJ, Read RJ, McCoy AJ, McCaffrey MW, Khan AR, Structure. 2006 Aug;14(8):1273-83. PMID:16905101
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2gzd.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2GZD
  • CSU: Contacts of Structural Units for 2GZD
  • Likely Quarternary Molecular Structure file(s) for 2GZD
  • Structure Factors (377 Kb)
  • Retrieve 2GZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GZD from S2C, [Save to disk]
  • Re-refined 2gzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GZD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GZD, from MSDmotif at EBI
  • Fold representative 2gzd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gzd_C] [2gzd] [2gzd_B] [2gzd_D] [2gzd_A]
  • SWISS-PROT database: [P62491] [Q7L804]
  • Domain organization of [RB11A_HUMAN] [RFIP2_HUMAN] by SWISSPFAM
  • Domain found in 2GZD: [RAB ] by SMART
  • Other resources with information on 2GZD
  • Community annotation for 2GZD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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