2GZK Dna Structural Protein date May 11, 2006
title Structure Of A Complex Of Tandem Hmg Boxes And Dna
authors K.Stott, G.S.Tang, K.B.Lee, J.O.Thomas
compound source
Molecule: Sex-Determining Region On Y Hmgb1
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens, Rattus Rattus
Organism_common: Human, Black Rat
Organism_taxid: 9606,10117
Strain: ,
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'- D(Gpgpgpaptpcptpapapapcpapaptpgpc)-3';
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: 5'- D(Gpcpaptptpgptptptpapgpaptpcpcpc)-3';
Chain: C
Engineered: Yes

Synthetic: Yes
methodSolution NMR
Primary referenceStructure of a Complex of Tandem HMG Boxes and DNA., Stott K, Tang GS, Lee KB, Thomas JO, J Mol Biol. 2006 Jun 30;360(1):90-104. Epub 2006 May 12. PMID:16813837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2GZK
  • Retrieve 2GZK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GZK from S2C, [Save to disk]
  • View 2GZK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GZK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GZK, from MSDmotif at EBI
  • Fold representative 2gzk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gzk_A] [2gzk_C] [2gzk] [2gzk_B]
  • SWISS-PROT database: [P63159] [Q6J4I5]
  • Domain organization of [HMGB1_RAT] [Q6J4I5_HUMAN] by SWISSPFAM
  • Domain found in 2GZK: [HMG ] by SMART
  • Other resources with information on 2GZK
  • Community annotation for 2GZK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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