2GZV Signaling Protein date May 12, 2006
title The Cystal Structure Of The Pdz Domain Of Human Pick1
authors J.E.Debreczeni, J.M.Elkins, X.Yang, G.Berridge, J.Bray, S.Colebro C.Smee, P.Savitsky, O.Gileadi, A.Turnbull, F.Von Delft, D.A.Doyl M.Sundstrom, C.Arrowsmith, J.Weigelt, A.Edwards, Structural Gen Consortium (Sgc)
compound source
Molecule: Prkca-Binding Protein
Chain: A
Fragment: Pdz Domain, Residues 19-105
Synonym: Protein Kinase C-Alpha-Binding Protein, Protein In With C Kinase 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pick1, Prkcabp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.149 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.588 37.257 29.442 90.00 95.75 90.00
method X-Ray Diffractionresolution 1.12 Å
note 2GZV is a representative structure
Primary referenceStructure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions., Elkins JM, Papagrigoriou E, Berridge G, Yang X, Phillips C, Gileadi C, Savitsky P, Doyle DA, Protein Sci. 2007 Apr;16(4):683-94. PMID:17384233
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (2gzv.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (2gzv.pdb2.gz) 70 Kb
  • CSU: Contacts of Structural Units for 2GZV
  • Likely Quarternary Molecular Structure file(s) for 2GZV
  • Structure Factors (453 Kb)
  • Retrieve 2GZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GZV from S2C, [Save to disk]
  • Re-refined 2gzv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GZV, from MSDmotif at EBI
  • Fold representative 2gzv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gzv_A] [2gzv]
  • SWISS-PROT database: [Q9NRD5]
  • Domain organization of [PICK1_HUMAN] by SWISSPFAM
  • Domain found in 2GZV: [PDZ ] by SMART
  • Other resources with information on 2GZV
  • Community annotation for 2GZV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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