2H04 Hydrolase date May 13, 2006
title Structural Studies Of Protein Tyrosine Phosphatase Beta Cata Domain In Complex With Inhibitors
authors A.G.Evdokimov, M.E.Pokross, R.L.Walter, M.Mekel, J.L.Gray, K.G.Pe M.B.Maier, K.D.Amarasinghe, C.M.Clark, R.Nichols
compound source
Molecule: Protein Tyrosine Phosphatase, Receptor Type, B,
Chain: A
Fragment: Catalytic Domain, Residues 1662-1973
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptprb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest-Hismbp
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.803 70.120 90.722 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 4UN enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of potent, non-peptidic inhibitors of HPTPbeta., Amarasinghe KK, Evidokimov AG, Xu K, Clark CM, Maier MB, Srivastava A, Colson AO, Gerwe GS, Stake GE, Howard BW, Pokross ME, Gray JL, Peters KG, Bioorg Med Chem Lett. 2006 Aug 15;16(16):4252-6. Epub 2006 Jun 12. PMID:16759857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2h04.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2H04
  • CSU: Contacts of Structural Units for 2H04
  • Likely Quarternary Molecular Structure file(s) for 2H04
  • Structure Factors (104 Kb)
  • Retrieve 2H04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H04 from S2C, [Save to disk]
  • Re-refined 2h04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H04
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H04, from MSDmotif at EBI
  • Fold representative 2h04 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h04] [2h04_A]
  • SWISS-PROT database: [P23467]
  • Domain organization of [PTPRB_HUMAN] by SWISSPFAM
  • Domain found in 2H04: [PTPc ] by SMART
  • Other resources with information on 2H04
  • Community annotation for 2H04 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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