2H04	Hydrolase	date	May 13, 2006
title	Structural Studies Of Protein Tyrosine Phosphatase Beta Cata Domain In Complex With Inhibitors
authors	A.G.Evdokimov, M.E.Pokross, R.L.Walter, M.Mekel, J.L.Gray, K.G.Pe M.B.Maier, K.D.Amarasinghe, C.M.Clark, R.Nichols
compound		source
Molecule: Protein Tyrosine Phosphatase, Receptor Type, B, Chain: A Fragment: Catalytic Domain, Residues 1662-1973 Ec: 3.1.3.48 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptprb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Top10 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest-Hismbp
symmetry	Space Group: P 21 21 21	R_factor 0.169 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.803 70.120 90.722 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	4UN	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design and synthesis of potent, non-peptidic inhibitors of HPTPbeta., Amarasinghe KK, Evidokimov AG, Xu K, Clark CM, Maier MB, Srivastava A, Colson AO, Gerwe GS, Stake GE, Howard BW, Pokross ME, Gray JL, Peters KG, Bioorg Med Chem Lett. 2006 Aug 15;16(16):4252-6. Epub 2006 Jun 12. PMID:16759857

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (2h04.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 2H04 CSU: Contacts of Structural Units for 2H04 Likely Quarternary Molecular Structure file(s) for 2H04 Structure Factors (104 Kb) Retrieve 2H04 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2H04 from S2C, [Save to disk] Re-refined 2h04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2H04 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2H04

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2H04, from MSDmotif at EBI Fold representative 2h04 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2h04] [2h04_A] SWISS-PROT database: [P23467] Domain organization of [PTPRB_HUMAN] by SWISSPFAM Domain found in 2H04: [PTPc ] by SMART

Other resources with information on 2H04

Community annotation for 2H04 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---