2H18 Transport Protein date May 16, 2006
title Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b)
authors A.Atanassova, W.Tempel, S.Dimov, D.Yaniw, C.H.Arrowsmith, A.M.Edw M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomic Consortium (Sgc)
compound source
Molecule: Adp-Ribosylation Factor-Like Protein 8a
Chain: A
Synonym: Adp-Ribosylation Factor-Like Protein 10b, Novel Sm Protein Indispensable For Equal Chromosome Segregation 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arl8a, Arl10b, Gie2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: P28a-Lic
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.406 66.460 39.646 90.00 117.54 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GDP, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • anterograde axonal transport...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2h18.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 2H18
  • CSU: Contacts of Structural Units for 2H18
  • Likely Quarternary Molecular Structure file(s) for 2H18
  • Structure Factors (201 Kb)
  • Retrieve 2H18 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H18 from S2C, [Save to disk]
  • Re-refined 2h18 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H18 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H18
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H18, from MSDmotif at EBI
  • Fold representative 2h18 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h18] [2h18_A]
  • SWISS-PROT database: [Q96BM9]
  • Domain organization of [ARL8A_HUMAN] by SWISSPFAM
  • Domain found in 2H18: [small_GTPase ] by SMART
  • Other resources with information on 2H18
  • Community annotation for 2H18 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science