2H1S Oxidoreductase date May 16, 2006
title Crystal Structure Of A Glyoxylatehydroxypyruvate Reductase Sapiens
authors E.Bitto, G.E.Wesenberg, G.N.Phillips Jr., C.A.Bingman, Center Fo Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Glyoxylate Reductasehydroxypyruvate Reductase
Chain: A, B, C, D
Ec: 1.1.1.79
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grhpr, Glxr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl834 P(Rare2)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp 16
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.996 66.436 148.774 90.00 98.59 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand MSE enzyme Oxidoreductase E.C.1.1.1.79 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (2h1s.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (2h1s.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2H1S
  • CSU: Contacts of Structural Units for 2H1S
  • Likely Quarternary Molecular Structure file(s) for 2H1S
  • Structure Factors (1430 Kb)
  • Retrieve 2H1S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H1S from S2C, [Save to disk]
  • Re-refined 2h1s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H1S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H1S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H1S, from MSDmotif at EBI
  • Fold representative 2h1s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h1s_A] [2h1s_D] [2h1s_B] [2h1s_C] [2h1s]
  • SWISS-PROT database: [Q9UBQ7]
  • Domain organization of [GRHPR_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2H1S with the sequences similar proteins can be viewed for 2H1S's classification [GRHPR_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GRHPR_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2H1S
  • Community annotation for 2H1S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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