2H4M Protein Transport date May 24, 2006
title Karyopherin Beta2transportin-M9nls
authors Y.M.Chook, A.E.Cansizoglu
compound source
Molecule: Transportin-1
Chain: A, B
Synonym: Importin Beta-2,Karyopherin Beta-2,M9 Region Inter Protein,Mip;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnpo1, Kpnb2, Mip1, Trn
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Heterogeneous Nuclear Ribonucleoprotein A1
Chain: C, D
Fragment: Residues: 309-357
Synonym: Hnrnp A1,Helix-Destabilizing Protein,Single-Strand Binding Protein,Hnrnp Core Protein A1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hnrnpa1, Hnrpa1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: C 1 2 1
R_factor 0.239 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.013 154.093 141.667 90.00 91.75 90.00
method X-Ray Diffractionresolution 3.05 Å
note 2H4M is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRules for nuclear localization sequence recognition by karyopherin beta 2., Lee BJ, Cansizoglu AE, Suel KE, Louis TH, Zhang Z, Chook YM, Cell. 2006 Aug 11;126(3):543-58. PMID:16901787
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (2h4m.pdb1.gz) 234 Kb
  • CSU: Contacts of Structural Units for 2H4M
  • Likely Quarternary Molecular Structure file(s) for 2H4M
  • Retrieve 2H4M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H4M from S2C, [Save to disk]
  • View 2H4M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H4M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H4M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h4m_D] [2h4m_C] [2h4m] [2h4m_A] [2h4m_B]
  • SWISS-PROT database: [P09651] [Q92973]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [ROA1_HUMAN] [TNPO1_HUMAN] by SWISSPFAM
  • Domain found in 2H4M: [IBN_N ] by SMART
  • Other resources with information on 2H4M
  • Community annotation for 2H4M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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