2H4U Hydrolase date May 25, 2006
title Crystal Structure Of Human Thioesterase Superfamily Member (Casp Target)
authors D.J.Ogg, J.Uppenberg, C.Arrowsmith, H.Berglund, A.Edwards, M.Ehn, S.Grasslund, S.Flodin, M.Hammerstrom, M.Hogbom, L.Holmberg- Schiavone, T.Kotenyova, P.Nilsson-Ehle, P.Nordlund, T.Nyman, C.Persson, J.Sagemark, M.Sundstrom, A.G.Thorsell, J.Weigelt, M.Hallberg, Structural Genomics Consortium (Sgc)
compound source
Molecule: Thioesterase Superfamily Member 2
Chain: A, B, C, D
Fragment: Residues 19-140
Ec: 3.1.2.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.050 90.970 114.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.1.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2h4u.pdb1.gz) 77 Kb
  • CSU: Contacts of Structural Units for 2H4U
  • Likely Quarternary Molecular Structure file(s) for 2H4U
  • Structure Factors (459 Kb)
  • Retrieve 2H4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H4U from S2C, [Save to disk]
  • Re-refined 2h4u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H4U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H4U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H4U, from MSDmotif at EBI
  • Fold representative 2h4u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h4u_A] [2h4u] [2h4u_D] [2h4u_C] [2h4u_B]
  • SWISS-PROT database: [Q9NPJ3]
  • Domain organization of [ACO13_HUMAN] by SWISSPFAM
  • Other resources with information on 2H4U
  • Community annotation for 2H4U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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