2H4V Hydrolase date May 25, 2006
title Crystal Structure Of The Human Tyrosine Receptor Phosphatase
authors E.Ugochukwu, A.Barr, S.Das, J.Eswaran, P.Savitsky, M.Sundstrom, A. C.Arrowsmith, J.Weigelt, J.Debreczeni, F.Von Delft, S.Knapp, Str Genomics Consortium (Sgc)
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Gamma
Chain: A, B
Fragment: Ptprg (Residues 831-1127)
Synonym: Protein-Tyrosine Phosphatase Gamma, R-Ptp-Gamma
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptprg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.849 78.859 121.758 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand ACT, CL, EDO, FLC, NA enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2h4v.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (2h4v.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2H4V
  • CSU: Contacts of Structural Units for 2H4V
  • Likely Quarternary Molecular Structure file(s) for 2H4V
  • Structure Factors (1509 Kb)
  • Retrieve 2H4V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H4V from S2C, [Save to disk]
  • Re-refined 2h4v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H4V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H4V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H4V, from MSDmotif at EBI
  • Fold representative 2h4v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h4v_A] [2h4v_B] [2h4v]
  • SWISS-PROT database: [P23470]
  • Domain organization of [PTPRG_HUMAN] by SWISSPFAM
  • Domain found in 2H4V: [PTPc ] by SMART
  • Other resources with information on 2H4V
  • Community annotation for 2H4V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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