2H5F Toxin date May 26, 2006
title Denmotoxin: A The Three-Finger Toxin From Colubrid Snake Boiga Dendrophila With Bird-Specific Activity
authors J.Pawlak, R.M.Kini, E.A.Stura
compound source
Molecule: Denmotoxin
Chain: A, B
 Organism_scientific: Boiga Dendrophila
Organism_taxid: 46286
Secretion: Venom
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.910 34.038 54.377 90.00 118.36 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand K, NA, PO4 enzyme
Primary referenceDenmotoxin: a three-finger toxin from colubrid snake Boiga dendrophila (mangrove catsnake)with bird-specific activity., Pawlak J, Mackessy SP, Fry BG, Bhatia M, Mourier G, Fruchart-Gaillard C, Servent D, Menez R, Stura E, Menez A, Kini RM, J Biol Chem. 2006 Jul 24;. PMID:16864572
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2h5f.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (2h5f.pdb2.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 2H5F
  • CSU: Contacts of Structural Units for 2H5F
  • Likely Quarternary Molecular Structure file(s) for 2H5F
  • Structure Factors (220 Kb)
  • Retrieve 2H5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H5F from S2C, [Save to disk]
  • Re-refined 2h5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H5F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H5F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h5f] [2h5f_A] [2h5f_B]
  • SWISS-PROT database: [Q06ZW0]
  • Domain organization of [NXAC_BOIDE] by SWISSPFAM
    • Other resources with information on 2H5F
  • Community annotation for 2H5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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