2H5U Oxidoreductase date May 27, 2006
title Crystal Structure Of Laccase From Cerrena Maxima At 1.9a Res
authors A.V.Lyashenko, A.G.Gabdoulkhakov, V.N.Zaitsev, V.S.Lamzin, P.F.L I.Bento, C.Betzel, N.E.Zhukhlistova, Y.N.Zhukova, A.M.Mikhailov
compound source
Molecule: Laccase
Chain: A
Ec: 1.10.3.2
Organism_scientific: Trametes Maxima
Organism_taxid: 259368
Strain: 0275 (Mont)Kraisel Of The Polyporaceae Family
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.581 77.101 130.884 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CU, MAN, NAG, NIY enzyme Oxidoreductase E.C.1.10.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePurification, crystallization and preliminary X-ray study of the fungal laccase from Cerrena maxima., Lyashenko AV, Zhukhlistova NE, Gabdoulkhakov AG, Zhukova YN, Voelter W, Zaitsev VN, Bento I, Stepanova EV, Kachalova GS, Koroleva OV, Cherkashyn EA, Tishkov VI, Lamzin VS, Schirwitz K, Morgunova EY, Betzel C, Lindley PF, Mikhailov AM, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Oct 1;62(Pt, 10):954-7. Epub 2006 Sep 19. PMID:17012782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2h5u.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 2H5U
  • CSU: Contacts of Structural Units for 2H5U
  • Likely Quarternary Molecular Structure file(s) for 2H5U
  • Structure Factors (374 Kb)
  • Retrieve 2H5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H5U from S2C, [Save to disk]
  • Re-refined 2h5u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H5U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H5U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h5u_A] [2h5u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2H5U
  • Community annotation for 2H5U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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